% pop_micro_plottopo() - plots microstate topoplots for a range of microstate numbers.
%
% Draws a plot with topographical maps for a range of microstate
% prototypes numbers.
%
% Usage:
% >> pop_micro_plottopo ( EEG ); % pop up window
% >> pop_micro_plottopo ( EEG, 'key1', 'val1', 'key2', 'val2' ... )
%
% Please cite this toolbox as:
% Poulsen, A. T., Pedroni, A., Langer, N., & Hansen, L. K. (2018).
% Microstate EEGlab toolbox: An introductionary guide. bioRxiv.
%
% Inputs
% EEG - EEG-lab EEG structure (channels x samples (x epochs)) with
% the field 'chanlocs'; and 'prototypes' fields in
% EEG.microstates.
%
% Optional input:
% 'plot_range' - The range of numbers of microstates to be displayed (as
% vector). If empty (default), measures for all microstate
% numbers will be plotted.
%
% Authors:
% Andreas Trier Poulsen, atpo@dtu.dk
% Technical University of Denmark, DTU Compute, Cognitive systems.
%
% August 2017.
%
% See also: eeglab() timtopo(), topoplot()
% Copyright (C) 2017 Andreas Trier Poulsen, atpo@dtu.dk
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software
% Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
function [EEG, com] = pop_micro_plottopo(EEG, varargin)
%% Error check and initialisation
if nargin < 1
help pop_micro_plottopo;
return;
end
% check whether necessary microstate substructures exist.
if ~isfield(EEG,'microstate')
error('No microstate data present. Run microstate segmentation first.')
end
com = '';
%% pop-up window in case no further input is given
if nargin < 2
settings = input_popup();
if strcmp(settings,'cancel')
return
end
popup_called = 1;
else
settings = check_settings(varargin);
popup_called = 0;
end
%% Define command string
if popup_called
com = sprintf('figure;MicroPlotTopo( %s', inputname(1));
else
com = sprintf('MicroPlotTopo( %s', inputname(1));
end
com = settings_to_string(com,settings);
com = [com ' );'];
%% Run microstate fitting by evaluating com-string
eval(com)
end
function settings = input_popup()
% Function for creating popup window to input algorithm settings
%
%% Create Inputs for popup
% plot_range
style.plot_range = 'edit';
line.plot_range = { {'Style' 'text' 'string' 'Range of microstates to plot:'}, ...
{'Style' style.plot_range 'string' '' 'tag' 'plot_range'},... %end of first line
{'Style' 'text' 'string' '(If empty; entire range will be plotted).'},...
{} }; %end of second line
geo.plot_range = {[1 .3] [1 .3]};
%% Order inputs for GUI
geometry = [geo.plot_range];
uilist = [line.plot_range];
%% Create Popup
[~,~,~,pop_out] = inputgui( geometry, uilist, ...
'pophelp(''pop_micro_plottopo'');', ...
'Plot microstate topographies for a range of microstate numbers -- pop_micro_plottopo()');
%% Interpret output from popup
if isstruct(pop_out)
settings = struct;
settings = interpret_popup(pop_out, settings, style);
else
settings = 'cancel';
end
end
% -------------- helper functions -------------- %
function settings = interpret_popup(pop_out, settings, style, popmenu)
% Interpret output from pop_up window, "pop_out", and arrange it in
% "settings" struct. The fields in "style" should be the same as in "pop_out"
% (defined as tags in inputgui.m). The struct popmenu is optional and only
% needed if popmenus are used in the pop_up window.
names = fieldnames(style);
for i = 1:length(names)
switch style.(names{i})
case 'edit'
if isempty(pop_out.(names{i})) % empty?
settings.(names{i}) = [];
else
settings.(names{i}) = eval(pop_out.(names{i}));
end
case 'checkbox'
settings.(names{i}) = pop_out.(names{i});
case 'popupmenu'
settings.(names{i}) = popmenu.(names{i}){pop_out.(names{i})};
end
end
end
function settings = check_settings(vargs)
%% check settings
% Checks settings given as optional inputs for MicroPlot.
% Undefined inputs is set to default values.
varg_check = { 'plot_range' 'real' [] []};
settings = finputcheck( vargs, varg_check);
if ischar(settings), error(settings); end; % check for error
end
function com = settings_to_string(com,settings)
%%
% Adds settings struct to existing com string in the form 'key1', 'val1',
% 'key2', 'val2' ... .
% Can handle structs, strings, vectors and scalars. I.e. not matrices.
names = fieldnames(settings);
for i = 1:length(names)
if isstruct(settings.(names{i})) % struct?
com = settings_to_string(com,settings.(names{i}));
elseif isempty(settings.(names{i})) % empty?
com = [ com sprintf(', ''%s'', []', names{i}) ];
elseif ischar(settings.(names{i})) % string?
com = [ com sprintf(', ''%s'', ''%s''', names{i}, settings.(names{i})) ];
elseif length(settings.(names{i})) > 1 % vector?
N_elements = length(settings.(names{i}));
range = max(settings.(names{i})) - min(settings.(names{i})) + 1;
if N_elements == range % write vetor as 'min_value:max_value'
com = [ com sprintf(', ''%s'', %g:%g', names{i}, ...
min(settings.(names{i})), max(settings.(names{i}))) ];
else % write vector with individual elements
com = [ com sprintf(', ''%s'', [%g', names{i}, ...
settings.(names{i})(1))];
for n = 2:N_elements
com = [ com sprintf(',%g', settings.(names{i})(n))];
end
com = [ com ']'];
end
else % scalar
com = [ com sprintf(', ''%s'', %g', names{i}, settings.(names{i})) ];
end
end
end